Software - The Wilke Lab

alignfigR

–

R package to visualize large multiple sequence alignments

Written by Stephanie J. Spielman

Source

codon_tools

–

Toolkit to manipulate synonymous codon usage in various ways

Written by Claus O. Wilke

Source
PyPI

colorblindr

–

An R package to simulate colorblindness on R figures

Written by Claire D. McWhite and Claus O. Wilke

Source

cowplot

–

Streamlined plot theme and plot annotations for ggplot2

Written by Claus O. Wilke

Source
CRAN

ggridges

–

Ridgeline plots in ggplot2

Written by Claus O. Wilke

Source
CRAN

parsemsf

–

Parse ThermoFisher MSF files and estimate protein abundances

Written by Benjamin R. Jack

Source
CRAN

PeptideBuilder

–

Simple Python library to generate model peptides

Written by Matthew Z. Tien and Dariya K. Sydykova

Pyvolve

–

Flexible Python module for simulating sequences along phylogenies

Written by Stephanie J. Spielman

sicegar

–

Analysis of single-cell viral growth curves

Written by M. Umut Caglar and Claus O. Wilke